Stem-loop cja-mir-20a

Accession

MI0031940

Description

Callithrix jacchus cja-mir-20a precursor miRNA

Sequence

cugaugugacagcuucuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguuuaguuaucuacugcauuaugagcacuuaaaguacugcuagcuguagaacuccag
(((..((.((((((...((((.(((.(((((((((((((((((.(((...........))))))))))))))))))))..))).)))).))))))...))..)))

Structure

   au  --g      ucu    c   -A                 G   uguu 
cug  gu   acagcu   guag acU  AAGUGCUUAUAGUGCAG UAG    u
|||  ||   ||||||   |||| |||  ||||||||||||||||| |||    a
gac  ca   ugucga   cguc uga  uucacgaguauuacguc auc    g
   cu  aga      --u    a   aa                 -   uauu 

Annotation confidence Not enough data

Genome context

chr1: 6514819-6514923 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cja-mir-20a

Mature cja-miR-20a

• Accession: MIMAT0039421
• Description: Callithrix jacchus cja-miR-20a mature miRNA
• Sequence: 25 - UAAAGUGCUUAUAGUGCAGGUAG - 47
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596