Stem-loop cja-mir-216a

Accession

MI0031948

Description

Callithrix jacchus cja-mir-216a precursor miRNA

Sequence

ggauggcugugaguuggcuUAAUCUCAGCUGGCAACUGUGAgauguucauacaaucccucacaguggucucugggauuaugcuaaacagagcaauuucc
(((..(((.((..(((((.(((((((((..(((.((((((((.(((....)))....)))))))).))).))))))))).))))).)).)))....)))

Structure

   --ug   g  ag     u         CU   A        ---a   u 
gga    gcu ug  uuggc UAAUCUCAG  GGC ACUGUGAg    ugu c
|||    ||| ||  ||||| |||||||||  ||| ||||||||    |||  
ccu    cga ac  aaucg auuaggguc  cug ugacacuc    aca a
   uuaa   g  -a     u         -u   g        ccua   u 

Annotation confidence Not enough data

Genome context

chr14: 51383739-51383837 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-216a

Mature cja-miR-216a

• Accession: MIMAT0039428
• Description: Callithrix jacchus cja-miR-216a mature miRNA
• Sequence: 20 - UAAUCUCAGCUGGCAACUGUGA - 41
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857