miRBase entry: cja-mir-16-1

Stem-loop cja-mir-16-1


Accession
MI0031963
Description
Callithrix jacchus cja-mir-16-1 precursor miRNA


Sequence

gucagcagugccuUAGCAGCACGUAAAUAUUGGCGuuaagauucuaaaauuaucuccaguauuaacugugcugcugaaguaagguugac
((((((..(((.((((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))).)))..))))))

Structure
      ag   c          -  A        C u   gauu 
gucagc  ugc uUAGCAGCAC GU AAUAUUGG G uaa    c
||||||  ||| |||||||||| || |||||||| | |||     
caguug  aug agucgucgug ca uuaugacc c auu    u
      ga   a          u  a        u u   aaaa 


Annotation confidence Not enough data
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Genome context
chr1: 64832157-64832245 [+]

Database links

Mature cja-miR-16

Accession MIMAT0039440
Description Callithrix jacchus cja-miR-16 mature miRNA
Sequence 14 - UAGCAGCACGUAAAUAUUGGCG - 35
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857

  2. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596