miRBase entry: cja-mir-92a-2

Stem-loop cja-mir-92a-2


Accession
MI0031978
Description
Callithrix jacchus cja-mir-92a-2 precursor miRNA


Sequence

gggaaaaucaaaccccuuucuacacagguugggaucgguugcaaugcuguguuucuguauggUAUUGCACUUGUCCCGGCCUGUugaguuugguggggauugugacc
........(((.((((...((..((((((((((((.(((.(((((((((((......)))))))))))))).))))))))))))..))......)))).))).....

Structure
gggaaaau   a    ---uuu  ac            c   u           uu 
        caa cccc      cu  acagguugggau ggu gcaaugcugug  u
        ||| ||||      ||  |||||||||||| ||| |||||||||||   
        guu gggg      ga  UGUCCGGCCCUG UCA CGUUAUgguau  c
---ccagu   a    ugguuu  gu            U   -           gu 


Annotation confidence Not enough data
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Genome context
chr1: 6515068-6515174 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from cja-mir-92a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-92a

Accession MIMAT0039454
Description Callithrix jacchus cja-miR-92a mature miRNA
Sequence 63 - UAUUGCACUUGUCCCGGCCUGU - 84
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857

  2. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596