miRBase entry: cja-mir-1a-1

Stem-loop cja-mir-1a-1


Accession
MI0032014
Description
Callithrix jacchus cja-mir-1a-1 precursor miRNA


Sequence

ccuacucagaguacauacuucuuuauguacccauaugaacauacaaugcuaUGGAAUGUAAAGAAGUAUGUAUuuuugguagg
((((((.(((((((((((((((((((((..(((((..(........)..))))).))))))))))))))))))))).))))))

Structure
      c                     ac     ug aca 
ccuacu agaguacauacuucuuuaugu  ccaua  a   u
|||||| |||||||||||||||||||||  |||||  |    
ggaugg uuuUAUGUAUGAAGAAAUGUA  GGUau  u   a
      u                     -A     cg aac 


Annotation confidence Not enough data
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Genome context
chr13: 59037922-59038004 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cja-mir-1a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-1a

Accession MIMAT0039490
Description Callithrix jacchus cja-miR-1a mature miRNA
Sequence 52 - UGGAAUGUAAAGAAGUAUGUAU - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857