Stem-loop cja-mir-412

Accession

MI0032025

Description

Callithrix jacchus cja-mir-412 precursor miRNA

Sequence

ccggcaucagcaccguucugggguaggggauggaUGGUCGACCAGUUGGAAAGUaauuguuucuaauguacuucaccugguccacuagccguccguacccgcugcagcccgcggggccugcgugccagg
(((((((((((.((((...(((((((((((((((((((.((((((.(((..((((((((....)))).))))))).)))))).....))))))))).))).))))..))))))).).))).))))).))

Structure

  -     -   - a    ucu   --    -   -         ----C      U   AA    -    u 
cc ggcau cag c ccgu   ggg  guag ggg auggaUGGU     GACCAG UGG  AGUa auug u
|| ||||| ||| | ||||   |||  |||| ||| |||||||||     |||||| |||  |||| ||||  
gg ccgug guc g ggcg   ccc  cguc ccc ugccugccg     cugguc acu  ucau uaau u
  a     c   c g    ---   ga    g   a         aucac      c   --    g    c 

Annotation confidence Not enough data

Genome context

chr10: 126984266-126984394 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cja-mir-412

Mature cja-miR-412

• Accession: MIMAT0039499
• Description: Callithrix jacchus cja-miR-412 mature miRNA
• Sequence: 35 - UGGUCGACCAGUUGGAAAGU - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857