miRBase entry: cja-mir-541

Stem-loop cja-mir-541

Accession

MI0032026

Description

Callithrix jacchus cja-mir-541 precursor miRNA

Sequence

gggaaaggauucugcugucggucccacuccaaaguucacagaaugggUGGUGGGCACAGAAUCCGGACUc
(((...((((((((.((((.(..((((((....((((...))))))))))).))))))))))))...)))

Structure

   aaa        c    g uc      caaa    a 
ggg   ggauucug uguc g  ccacuc    guuc  
|||   |||||||| |||| |  ||||||    |||| c
cUC   CCUAAGAC ACGG U  GGUggg    uaag  
   AGG        -    G --      ----    a

Annotation confidence Not enough data

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Genome context

chr10: 126983339-126983408 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from cja-mir-541

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-541

Accession	MIMAT0039500
Description	Callithrix jacchus cja-miR-541 mature miRNA
Sequence	48 - UGGUGGGCACAGAAUCCGGACU - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857