Stem-loop cja-mir-30d

Accession

MI0032027

Description

Callithrix jacchus cja-mir-30d precursor miRNA

Sequence

gaaagucuguuguUGUAAACAUCCCCGACUGGAAGCuguaagauucaacuaagcuuucagucagauguuugcugcuaccggcuauuc
...((((.((.((.(((((((((...(((((((((((..............))))))))))).))))))))).)).)).))))....

Structure

-gaa    u  u  U         CCC           guaaga 
    aguc gu gu GUAAACAUC   GACUGGAAGCu      u
    |||| || || |||||||||   |||||||||||       
    ucgg ca cg cguuuguag   cugacuuucga      u
cuua    c  u  u         --a           aucaac 

Annotation confidence Not enough data

Genome context

chr16: 59862478-59862564 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-30d

Mature cja-miR-30d

• Accession: MIMAT0039501
• Description: Callithrix jacchus cja-miR-30d mature miRNA
• Sequence: 14 - UGUAAACAUCCCCGACUGGAAGC - 36
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857


2. PubMed ID: 28640911
   Evolution of microRNA in primates
   McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
   PLoS One (2017) 12:e0176596