miRBase entry: cja-mir-499a

Stem-loop cja-mir-499a

Accession

MI0032037

Description

Callithrix jacchus cja-mir-499a precursor miRNA

Sequence

ggcccuguccuucaccccugcccuguccccugcgccuugggcgggcggccgUUAAGACUUGCAGUGAUGUUUaacuccucuccacgugaacaucacagcaagucugugcugcuucccgucccuacgcugccugggcaggguuugggggcaaggggugggagcc
((((((((((((..((((((((((((((.(.(((....(((((((.(((.((..((((((((.((((((((((.............)))))))))).))))))))..)).))).)))))))...))).)...)))))))))..)))))..))))))))).)))

Structure

   -         ca     --         --c u   ccuu       c   c  UA        A          acucc 
ggc ccuguccuu  ccccu  gcccugucc   c gcg    gggcggg ggc gU  AGACUUGC GUGAUGUUUa     u
||| |||||||||  |||||  |||||||||   | |||    ||||||| ||| ||  |||||||| ||||||||||     c
ccg gggugggga  ggggg  ugggacggg   g cgc    ccugccc ucg cg  ucugaacg cacuacaagu     u
   a         ac     uu         ucc u   -auc       u   u  ug        a          gcacc

Annotation confidence Not enough data

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Genome context

chr5: 2272789-2272951 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-499a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-499a

Accession	MIMAT0039510
Description	Callithrix jacchus cja-miR-499a mature miRNA
Sequence	52 - UUAAGACUUGCAGUGAUGUUU - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857