miRBase entry: cja-mir-1296

Stem-loop cja-mir-1296


Accession
MI0032039
Description
Callithrix jacchus cja-mir-1296 precursor miRNA


Sequence

ccuaccuaacugggUUAGGGCCCUGGCUCCAUCUCCuuuaggaaaaccuucuguggggaguggggcuucgacccuaacccagguggg
....(((..(((((((((((....(((((((.((((((..((((....))))..)))))))))))))....)))))))))))..)))

Structure
ccua   aa           CCCU       U      ua    a 
    ccu  cugggUUAGGG    GGCUCCA CUCCuu  ggaa a
    |||  |||||||||||    ||||||| ||||||  ||||  
    ggg  gacccaauccc    ucggggu gagggg  ucuu c
----   ug           agcu       -      ug    c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr12: 60992297-60992383 [+]

Database links

Mature cja-miR-1296

Accession MIMAT0039512
Description Callithrix jacchus cja-miR-1296 mature miRNA
Sequence 15 - UUAGGGCCCUGGCUCCAUCUCC - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857