miRBase entry: cja-mir-27b

Stem-loop cja-mir-27b


Accession
MI0032047
Description
Callithrix jacchus cja-mir-27b precursor miRNA


Sequence

ggaagaugcucaccggcccuuuauuuaugcccagcgaugaccucucugacaaggugcagagcuuagcugauuggugaacagugauugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaaggugagauggggacaguuaaguuggagccgcuggggcagaggcc
((....(((((..((((((((((.((.(.((((....(.((((((((....(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))..)))).)))).)..)))).).)).))))..)).))))...)))))....))

Structure
  aaga     -ac    -  --    u  a g    gcga g    -    gaca                 g    g       ugau   u 
gg    ugcuc   cggc cc  uuua uu u ccca    u accu cucu    aggugcagagcuuagcu auug ugaacag    ugg  
||    |||||   |||| ||  |||| || | ||||    | |||| ||||    ||||||||||||||||| |||| |||||||    ||| u
cc    acggg   gccg gg  gaau ga a gggu    a ugga gaga    uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
  ggag     guc    a  uu    u  c g    --ag g    a    --ag                 -    -       --uc   u 


Annotation confidence Not enough data
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Genome context
chr1: 78275131-78275306 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cja-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-27b

Accession MIMAT0039519
Description Callithrix jacchus cja-miR-27b mature miRNA
Sequence 100 - UUCACAGUGGCUAAGUUCUGC - 120
Evidence experimental
Illumina [1-2]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857

  2. PubMed ID: 28640911
    Evolution of microRNA in primates
    McCreight JC, Schneider SE, Wilburn DB, Swanson WJ
    PLoS One (2017) 12:e0176596