miRBase entry: cja-mir-218

Stem-loop cja-mir-218


Accession
MI0032061
Description
Callithrix jacchus cja-mir-218 precursor miRNA


Sequence

gguccugccuuuggccuagugguugguguagugauaauguagcgagauuuucugUUGUGCUUGAUCUAACCAUGUgguugcaagguaugaguaaaacaugguuccgucaagcaccauggaacgucacgcagcuuucuacagcaugacaagcugcugaggcuuaaaucaggauu
.((((((.....(((((((((((((.(((((.((....((.(((.(((.((((((.(((((((((..((((((((..((((.........)))).))))))))..))))))))).)))))).))).))).)))).))))).))......)))))).))))).....)))))).

Structure
g      ccuuu     -      ------  g     u  uaau  a   a   u      U         CU        gg    aag 
 guccug     ggccu aguggu      ug uguag ga    gu gcg gau uucugU GUGCUUGAU  AACCAUGU  uugc   g
 ||||||     ||||| ||||||      || ||||| ||    || ||| ||| |||||| |||||||||  ||||||||  ||||   u
 uaggac     ucgga ucgucg      ac acauc uu    cg cgc cug aaggua cacgaacug  uugguaca  aaug   a
u      uaaau     g      aacagu  g     u  ----  a   a   c      c         cc        -a    agu 


Annotation confidence Not enough data
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Genome context
chr3: 170692316-170692488 [-]

Database links

Mature cja-miR-218

Accession MIMAT0039531
Description Callithrix jacchus cja-miR-218 mature miRNA
Sequence 55 - UUGUGCUUGAUCUAACCAUGU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857