miRBase entry: cja-mir-96

Stem-loop cja-mir-96

Accession

MI0032064

Description

Callithrix jacchus cja-mir-96 precursor miRNA

Sequence

gugucaucugcuuggccgauUUUGGCACUAGCACAUUUUUGCUuuucucuccgcucugagcaaucaugugcagugccaauaugggaaaagcaggaugc
(((((..((((((..((.((.((((((((.((((((..((((((.............))))))..)))))))))))))).)).))..)))))))))))

Structure

     au      gg  g  U        A      UU      uucuc 
guguc  cugcuu  cc au UUGGCACU GCACAU  UUGCUu     u
|||||  ||||||  || || |||||||| ||||||  ||||||     c
cguag  gacgaa  gg ua aaccguga cgugua  aacgag     c
     --      aa  g  u        -      cu      ucucg

Annotation confidence Not enough data

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Genome context

chr8: 116491748-116491845 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-96

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-96

Accession	MIMAT0039534
Description	Callithrix jacchus cja-miR-96 mature miRNA
Sequence	21 - UUUGGCACUAGCACAUUUUUGCU - 43
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857