miRBase entry: cja-mir-330

Stem-loop cja-mir-330


Accession
MI0032086
Description
Callithrix jacchus cja-mir-330 precursor miRNA


Sequence

uuccaggaucgcgucccggccacuucgugcugugugaucuuuggcgaucacugccucucugggccugugucuuaggcucugcaagaucaaccgagCAAAGCACACGGCCUGCAGAGAggcagcgcucugccccuuacucggccgcgguguucaucggagaccuccaggga
((((.(((..(.(((((((.((((.((.((((.((((.....(((((.(.(((((((((((((((((((.(((..((((.............)))).))))))).))))..))))))))))).).)).)))..)))).)))))).))))....)))).))))))).))))

Structure
    a   uc c   -    ---c    u  u    u    ucuuu   -  u a           --    -    u   ag    ugcaa 
uucc gga  g guc ccgg    cacu cg gcug guga     ggc ga c cugccucucug  ggcc ugug cuu  gcuc     g
|||| |||  | ||| ||||    |||| || |||| ||||     ||| || | |||||||||||  |||| |||| |||  ||||     a
aggg ccu  c cag ggcu    gugg gc cggc cauu     ccg cu g gacggAGAGAC  CCGG ACAC GAA  Cgag     u
    a   -- -   a    acuu    c  -    u    ---cc   u  c c           GU    C    -   -A    ccaac 


Annotation confidence Not enough data
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Genome context
chr22: 37708684-37708853 [-]

Database links

Mature cja-miR-330

Accession MIMAT0039554
Description Callithrix jacchus cja-miR-330 mature miRNA
Sequence 96 - CAAAGCACACGGCCUGCAGAGA - 117
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857