miRBase entry: cja-mir-499b

Stem-loop cja-mir-499b


Accession
MI0032116
Description
Callithrix jacchus cja-mir-499b precursor miRNA


Sequence

gcguagggacgggaagcagcacagacuugcugugauguucacguggagaggaguuaAACAUCACUGCAAGUCUUAACggccgcccgcccaaggcgc
((.(.(((.((((..((.....((((((((.((((((((.((.(......).))..)))))))).)))))))).....))..))))))).).))..

Structure
--  g a   a    aa  agcac        u        -c  g gg 
  gc u ggg cggg  gc     agacuugc gugauguu  ac u  a
  || | ||| ||||  ||     |||||||| ||||||||  || |   
  cg a ccc gccc  cg     UCUGAACG CACUACAA  ug g  g
cg  g a   -    gc  gCAAU        U        au  a ga 


Annotation confidence Not enough data
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Genome context
chr5: 2272825-2272920 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cja-mir-499b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-499b

Accession MIMAT0039581
Description Callithrix jacchus cja-miR-499b mature miRNA
Sequence 57 - AACAUCACUGCAAGUCUUAAC - 77
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857