miRBase entry: cja-mir-302d

Stem-loop cja-mir-302d

Accession

MI0032123

Description

Callithrix jacchus cja-mir-302d precursor miRNA

Sequence

aggaacccccucuACUUUAACAUGGAGGCACUUGCugagacaugacaaaaaUAAGUGCUUCCAUGUUUGAGUGUggugguuccu
(((((((.((..(((((.((((((((((((((((.................)))))))))))))))).))))).)).)))))))

Structure

       c  uc     U                Cugagac 
aggaacc cc  uACUU AACAUGGAGGCACUUG       a
||||||| ||  ||||| ||||||||||||||||       u
uccuugg gg  GUGAG UUGUACCUUCGUGAAU       g
       u  -U     U                aaaaaca

Annotation confidence Not enough data

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Genome context

chr3: 80984903-80984986 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from cja-mir-302d

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-302d-5p

Accession	MIMAT0039589
Description	Callithrix jacchus cja-miR-302d-5p mature miRNA
Sequence	14 - ACUUUAACAUGGAGGCACUUGC - 35
Evidence	experimental Illumina [1]

Mature cja-miR-302d-3p

Accession	MIMAT0039590
Description	Callithrix jacchus cja-miR-302d-3p mature miRNA
Sequence	52 - UAAGUGCUUCCAUGUUUGAGUGU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857