miRBase entry: cja-mir-3546

Stem-loop cja-mir-3546

Accession

MI0032130

Description

Callithrix jacchus cja-mir-3546 precursor miRNA

Sequence

uccucugaccaacaagcuuuuugcucgucuuauacgugagcaucagguAUAACCCGGGCCAAAAGCUCgcccgucacagga
((((.((((...(.(((((((.(((((..((((((.(((...))).))))))..))))).))))))).)...)))).))))

Structure

    c    caa a       u     uc      g   g 
uccu ugac   c agcuuuu gcucg  uuauac uga  
|||| ||||   | ||||||| |||||  |||||| ||| c
agga acug   g UCGAAAA CGGGC  AAUAug acu  
    c    ccc C       C     CC      g   a

Annotation confidence Not enough data

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Genome context

chr10: 47444909-47444989 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cja-mir-3546

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-3546

Accession	MIMAT0039595
Description	Callithrix jacchus cja-miR-3546 mature miRNA
Sequence	49 - AUAACCCGGGCCAAAAGCUC - 68
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857