miRBase entry: cja-mir-208a-2

Stem-loop cja-mir-208a-2


Accession
MI0032133
Description
Callithrix jacchus cja-mir-208a-2 precursor miRNA


Sequence

uccugugacgggcgagcuuuuggcccggguuauaccugaugcucacguAUAAGACGAGCAAAAAGCUUGUuggucagagga
((((.((((.(((((((((((.((.((..((((((.(((...))).))))))..)).)).))))))))))).)))).))))

Structure
    g    g           g  c  gg      c   u 
uccu ugac ggcgagcuuuu gc cg  uuauac uga  
|||| |||| ||||||||||| || ||  |||||| ||| g
agga acug uUGUUCGAAAA CG GC  AAUAug acu  
    g    g           A  A  AG      c   c 


Annotation confidence Not enough data
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Genome context
chr10: 47444909-47444989 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cja-mir-208a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-208a

Accession MIMAT0039597
Description Callithrix jacchus cja-miR-208a mature miRNA
Sequence 49 - AUAAGACGAGCAAAAAGCUUGU - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857