miRBase entry: cja-mir-103b-1

Stem-loop cja-mir-103b-1


Accession
MI0032158
Description
Callithrix jacchus cja-mir-103b-1 precursor miRNA


Sequence

gaacaggucucaaugccuUCAUAGCCCUGUACAAUGCUGCUugauccauaugcaacaaggcagcacuguaaagaagccgagggcaguaagaaaauc
.......(((...(((((((...((.((.((((.((((((((...............)))))))).)))).))..)).)))))))...))).....

Structure
gaacagg   caa       AUA  -C  G    A        gaucca 
       ucu   ugccuUC   GC  CU UACA UGCUGCUu      u
       |||   |||||||   ||  || |||| ||||||||      a
       aga   acgggag   cg  ga augu acgacgga      u
--cuaaa   aug       --c  aa  a    c        acaacg 


Annotation confidence Not enough data
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Genome context
chr2: 29819340-29819435 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cja-mir-103b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-103b

Accession MIMAT0039622
Description Callithrix jacchus cja-miR-103b mature miRNA
Sequence 19 - UCAUAGCCCUGUACAAUGCUGCU - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857