miRBase entry: cja-mir-519c

Stem-loop cja-mir-519c


Accession
MI0032207
Description
Callithrix jacchus cja-mir-519c precursor miRNA


Sequence

ucucagccugugacgcUCUGGACAGAAGCGUGUUCUguugucugaaagaaauagaaaguguuucuguucaaaggauuacuguuugaga
((((((.(.((((..((.((((((((((((..(((((((.(((...))))))))))..)))))))))))).))..)))).).))))))

Structure
      c u    cg  C            UG       g   g 
ucucag c guga  cU UGGACAGAAGCG  UUCUguu ucu  
|||||| | ||||  || ||||||||||||  ||||||| ||| a
agaguu g cauu  ga acuugucuuugu  aagauaa aga  
      u u    ag  a            ga       -   a 


Annotation confidence Not enough data
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Genome context
chr22: 44897030-44897117 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from cja-mir-519c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cja-miR-519c

Accession MIMAT0039666
Description Callithrix jacchus cja-miR-519c mature miRNA
Sequence 17 - UCUGGACAGAAGCGUGUUCU - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857