miRBase entry: cja-mir-548w

Stem-loop cja-mir-548w


Accession
MI0032245
Description
Callithrix jacchus cja-mir-548w precursor miRNA


Sequence

agcaaauauuagauugguacaaaaguaaucgccguuuuugccauuaguguaaauuaaguaAUGGCCAAAAUGGCGAUUACUuuugcacugaccuaauagcu
(((...((((((.(((((.(((((((((((((((((((.(((((((.(........).))))))).))))))))))))))))))).))))).)))))))))

Structure
   aaa      a     a                   u       g gua 
agc   uauuag uuggu caaaaguaaucgccguuuu gccauua u   a
|||   |||||| ||||| ||||||||||||||||||| ||||||| |    
ucg   auaauc aguca guuuUCAUUAGCGGUAAAA CGGUAau a   a
   ---      c     c                   C       g auu 


Annotation confidence Not enough data
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Genome context
chr13: 11191044-11191144 [-]

Database links

Mature cja-miR-548w

Accession MIMAT0039701
Description Callithrix jacchus cja-miR-548w mature miRNA
Sequence 61 - AUGGCCAAAAUGGCGAUUACU - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857