miRBase entry: cja-mir-9943

Stem-loop cja-mir-9943


Accession
MI0032258
Description
Callithrix jacchus cja-mir-9943 precursor miRNA


Sequence

gccuccuuguuaggggcugcggggagcgauaauuggggugguuagcuggagaacaucugcgagggucCUCACAUGAUGAACAGACCUGAAGacccagagauagucguuauccagugagaugagggggc
(((((((((((....((((.((..((((((.(((.((((..(((((((.....((((((.(((....))).)).))))..)))..))))..))))...))).)))))).))))))..)))))))))))

Structure
           aggg    c  gg      a   --g    gg    --   gagaa    -  c   g 
gccuccuuguu    gcug gg  agcgau auu   gggu  uuag  cug     cauc ug gag g
|||||||||||    |||| ||  |||||| |||   ||||  ||||  |||     |||| || |||  
cgggggaguag    ugac cu  uugcug uag   ccca  AGUC  GAC     GUAG AC CUC u
           --ag    -  -a      a   aga    GA    CA   ---AA    U  A   c 


Annotation confidence Not enough data
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Genome context
chr11: 21357653-21357780 [+]

Database links

Mature cja-miR-9943

Accession MIMAT0039713
Description Callithrix jacchus cja-miR-9943 mature miRNA
Sequence 68 - CUCACAUGAUGAACAGACCUGAAG - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857