miRBase entry: cja-mir-9947

Stem-loop cja-mir-9947

Accession

MI0032266

Description

Callithrix jacchus cja-mir-9947 precursor miRNA

Sequence

ugggaggagagucacgGCAGGCUGACUCUCUCUGAGCUcaggaguaauguggguaaaggagcuuugggagucaggcgccguggcuuacaccuguca
(((.(((.((((((((((.(.(((((((((...((((((...................)))))).))))))))).)))))))))))...))).)))

Structure

   g   --a          A G         UCU      aggaguaa 
ugg agg   gagucacgGC G CUGACUCUC   GAGCUc        u
||| |||   |||||||||| | |||||||||   ||||||        g
acu ucc   uucggugccg c gacugaggg   uucgag        u
   g   aca          - g         --u      gaaauggg

Annotation confidence Not enough data

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Genome context

chr9: 46657644-46657739 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cja-mir-9947

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cja-miR-9947

Accession	MIMAT0039721
Description	Callithrix jacchus cja-miR-9947 mature miRNA
Sequence	17 - GCAGGCUGACUCUCUCUGAGCU - 38
Evidence	experimental Illumina [1]

References

PubMed ID: 25038751
The common marmoset genome provides insight into primate biology and evolution
"Marmoset Genome Sequencing and Analysis Consortium"
"Nat Genet (2014) 46:850-857