Stem-loop cja-mir-9952a-1

Accession

MI0032272

Description

Callithrix jacchus cja-mir-9952a-1 precursor miRNA

Sequence

cuggggcuuguagaauaucaaguggauaucauuuuugacugccauugugagucagaccucaguugucauggccucuagccacuagcgaccagucacuggaGUUUAUGACUAACUGAGGCCUGAuugacgaugucagucaaaagauggcauaacuuaccaacuggucguguguauauuucucag
((((((((((........)))))......((((((((((((.((((((.((((((.(((((((((((((((.((((((..(((.......)))..)))))).))))))).)))))))).)))))).)))))).))))).)))))))(((((....(((....)))..)))))......)))))

Structure

     --------gcuuguagaauaucaaguggauau       -     c      g      a        -       c      cc   ag 
cuggg                                cauuuuu gacug cauugu agucag ccucaguu gucaugg cucuag  acu  c
|||||                                ||||||| ||||| |||||| |||||| |||||||| ||||||| ||||||  |||  g
gacuc                                guagaaa cugac guagca uuAGUC GGAGUCAA CAGUAUU Gagguc  uga  a
     uuuauaugugugcuggucaaccauucaauacg       a     u      g      C        U       U      ac   cc 

Annotation confidence Not enough data

Genome context

chr1: 187676110-187676292 [+]

Mature cja-miR-9952a

• Accession: MIMAT0039727
• Description: Callithrix jacchus cja-miR-9952a mature miRNA
• Sequence: 101 - GUUUAUGACUAACUGAGGCCUGA - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857