Stem-loop cja-mir-9954

Accession

MI0032275

Description

Callithrix jacchus cja-mir-9954 precursor miRNA

Sequence

gaacuccugacauuaggugaucccccccaccucgggcucccaaagugccuggauuacaggcaugagucaccaugcccagccaaaauauuguuuuaaauUAGUUGGAUGUGGUGGCCCAUgccuuugguucuagccacuugcaaggcuugaggugggaggauugccugagcccagaaguuc
(((((.(((...(((((((((((..(((((((((((((....(((((.((((((((.(((((((.(((((((((.(((((.((..((......))..)).))))).))))))))).))))))).))).))))).)))))....))))))))))))).)))))))))))...))).)))))

Structure

     c   aca           cc             ccca     c     -   c       a         c     c  aa  uu 
gaacu cug   uuaggugaucc  cccaccucgggcu    aagug cugga uua aggcaug gucaccaug ccagc aa  ua  g
||||| |||   |||||||||||  |||||||||||||    ||||| ||||| ||| ||||||| ||||||||| ||||| ||  ||   
cuuga gac   aguccguuagg  ggguggaguucgg    uucac gaucu ggu uccgUAC CGGUGGUGU GGUUG Uu  au  u
     a   ccg           -a             aacg     c     u   u       C         A     A  aa  uu 

Annotation confidence Not enough data

Genome context

chr12: 28560769-28560948 [+]

Mature cja-miR-9954

• Accession: MIMAT0039729
• Description: Callithrix jacchus cja-miR-9954 mature miRNA
• Sequence: 99 - UAGUUGGAUGUGGUGGCCCAU - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857