miRBase entry: cja-mir-9956

Stem-loop cja-mir-9956


Accession
MI0032277
Description
Callithrix jacchus cja-mir-9956 precursor miRNA


Sequence

cagcucugggggccguuguucggugcuggggcugacagaggaggcucggugucuacagcuagcaagUCAACGUUUCUCCUCUUGUCCcuggugagguguagcggcggcacacggcug
(((((.((...(((((((((((.((((((((...((((((((((..((.((.((..........)).)).))..))))))).))))))))))..).)).))))))))).)).)))))

Structure
     c  ggg         -  g --       cug   -       cu  g  u  acag 
cagcu ug   gccguuguu cg u  gcugggg   aca gaggagg  cg ug cu    c
||||| ||   ||||||||| || |  |||||||   ||| |||||||  || || ||     
gucgg ac   cggcggcga gu g  uggucCC   UGU CUCCUCU  GC AC ga    u
     c  --a         u  g ag       ---   U       UU  A  U  acga 


Annotation confidence Not enough data
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Genome context
chr9: 102402617-102402733 [+]

Database links

Mature cja-miR-9956

Accession MIMAT0039731
Description Callithrix jacchus cja-miR-9956 mature miRNA
Sequence 67 - UCAACGUUUCUCCUCUUGUCC - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857