Stem-loop cja-mir-9962

Accession

MI0032284

Description

Callithrix jacchus cja-mir-9962 precursor miRNA

Sequence

agagaugaucucugucggcaugucgaugacugaucgcccagcucgcagagaugaucucugucggcaugucgaugacugaucgcccagcucgcagagaugaUCUCUGUCGGCAUGUCGAUGACUgaucgcccagcucgcagagaugaucucugcuggccugucgaugacugaucgcccagcucgcagagaugaucucu
((((((.((((((((.(((..(.((((.(.(.((((.(..(((.((((((((.((((((((.(((..(.((((.(.(.((((.(..(((.(((((((...))))))).)))..).)))).).).)))).)..))).)))))))).)))))))).)))..).)))).).).)))).)..))).)))))))).))))))

Structure

      g        c   au u    g c g    c ca   c        g        c   au u    g c g    c ca   c       u 
agagau aucucugu ggc  g cgau a u aucg c  gcu gcagagau aucucugu ggc  g cgau a u aucg c  gcu gcagaga  
|||||| |||||||| |||  | |||| | | |||| |  ||| |||||||| |||||||| |||  | |||| | | |||| |  ||| ||||||| g
ucucua uagagacg ucg  c gcua u a uagc g  cgg cgucucua uagagacg ucg  c gcua U A UAGC G  CGG UGUCUCU  
      g        c   ac c    g c g    u uc   u        g        c   ac c    g C G    U UA   C       a 

Annotation confidence Not enough data

Genome context

chr22: 17929021-17929217 [-]

Mature cja-miR-9962

• Accession: MIMAT0039737
• Description: Callithrix jacchus cja-miR-9962 mature miRNA
• Sequence: 101 - UCUCUGUCGGCAUGUCGAUGACU - 123
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25038751
   The common marmoset genome provides insight into primate biology and evolution
   "Marmoset Genome Sequencing and Analysis Consortium"
   "Nat Genet (2014) 46:850-857