miRBase entry: cja-mir-9971

Stem-loop cja-mir-9971


Accession
MI0032294
Description
Callithrix jacchus cja-mir-9971 precursor miRNA


Sequence

gacuccaagccaggguuucugucuUGCGGAUUGGUUCUUUCUGCUCCaucucagugccguucucacccaaaugccggugagcaaggaguagccagcccgaucugggagccacaccuggcuggaguc
(((((((.((((((.....((.(((.((((((((..((..(((((((.(((((.((.((((........)))).)).)))).).)))))))..)).)))))))).))).))..)))))))))))))

Structure
       a      guuuc  u   G        UU  UU       a -    g  c    cuc 
gacucca gccagg     ug cuU CGGAUUGG  CU  CUGCUCC u cuca ug cguu   a
||||||| ||||||     || ||| ||||||||  ||  ||||||| | |||| || ||||    
cugaggu cggucc     ac gag gucuagcc  ga  gaugagg a gagu gc guaa   c
       -      ---ac  c   g        -c  cc       a c    g  c    acc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 36873470-36873595 [-]

Database links

Mature cja-miR-9971

Accession MIMAT0039747
Description Callithrix jacchus cja-miR-9971 mature miRNA
Sequence 25 - UGCGGAUUGGUUCUUUCUGCUCC - 47
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25038751
    The common marmoset genome provides insight into primate biology and evolution
    "Marmoset Genome Sequencing and Analysis Consortium"
    "Nat Genet (2014) 46:850-857