Stem-loop sequence hsa-mir-548bc

Accession

MI0032315 (change log)

Description

Homo sapiens miR-548bc stem-loop

Literature search

41 open access papers mention hsa-mir-548bc
(141 sentences)

Stem-loop

   -------------ucuu    uac         -                        uac 
5'                  uugu   agguuggug agaaguaaucgcgguuuuugccau   u
                    ||||   ||||||||| ||||||||||||||||||||||||    
3'                  aaua   uccaaccac uuuucauuagugucaaaaacggua   g
   auuaacuucugguuuau    uaa         g                        cuc 

Deep sequencing

3484 reads, 1.53 reads per million, 131 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr17: 39297400-39297509 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0032315

Mature sequence hsa-miR-548bc

• Accession: MIMAT0039765
• Sequence: 58 - aaaaacugugauuacuuuugc - 78
• Deep sequencing: 1541 reads, 122 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:25215888 "Comparison of hepatocellular carcinoma miRNA expression profiling as evaluated by next generation sequencing and microarray" Murakami Y, Tanahashi T, Okada R, Toyoda H, Kumada T, Enomoto M, Tamori A, Kawada N, Taguchi YH, Azuma T PLoS One. 9:e106314(2014).