miRBase entry: pal-mir-34c

Stem-loop pal-mir-34c


Accession
MI0032331
Description
Pteropus alecto pal-mir-34c precursor miRNA


Sequence

AGGCAGUGUAGUUAGCUGAUUGCuaauaguaccAAUCACUAACCACACGGCCAGG
.(((.((((.(((((.((((((.((....)).))))))))))).)))).)))...

Structure
--A   A    A     C      C  a 
   GGC GUGU GUUAG UGAUUG ua u
   ||| |||| ||||| |||||| ||  
   CCG CACA CAAUC ACUAAc au a
GGA   G    C     -      c  g 


Annotation confidence Not enough data
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Genome context
KB030667.1: 5971006-5971060 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-34c-5p

Accession MIMAT0039791
Description Pteropus alecto pal-miR-34c-5p mature miRNA
Sequence 1 - AGGCAGUGUAGUUAGCUGAUUGC - 23
Evidence experimental
Illumina [1]

Mature pal-miR-34c-3p

Accession MIMAT0039792
Description Pteropus alecto pal-miR-34c-3p mature miRNA
Sequence 34 - AAUCACUAACCACACGGCCAGG - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682