miRBase entry: pal-mir-3958

Stem-loop pal-mir-3958


Accession
MI0032339
Description
Pteropus alecto pal-mir-3958 precursor miRNA


Sequence

AGGUUGUCCGUGAUGUAUUUGCUuuguuuauggcAGAUAUUGCACGGUUGAUCUCU
(((((..(((((..(((((((((........)))))))))..)))))..)))))..

Structure
--     GU     AU         uug 
  AGGUU  CCGUG  GUAUUUGCU   u
  |||||  |||||  |||||||||    
  UCUAG  GGCAC  UAUAGAcgg   u
UC     UU     GU         uau 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22080829-22080884 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from pal-mir-3958
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-3958-5p

Accession MIMAT0039807
Description Pteropus alecto pal-miR-3958-5p mature miRNA
Sequence 1 - AGGUUGUCCGUGAUGUAUUUGCU - 23
Evidence experimental
Illumina [1]

Mature pal-miR-3958-3p

Accession MIMAT0039808
Description Pteropus alecto pal-miR-3958-3p mature miRNA
Sequence 35 - AGAUAUUGCACGGUUGAUCUCU - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682