miRBase entry: pal-mir-221

Stem-loop pal-mir-221


Accession
MI0032357
Description
Pteropus alecto pal-mir-221 precursor miRNA


Sequence

ACCUGGCAUACAAUGUAGGUUUCuguguuuguuaggcaacAGCUACAUUGUCUGCUGGGUUU
((((((((.(((((((((....((((((((...)))).))))))))))))).))))))))..

Structure
--        U         GUUU    -    g 
  ACCUGGCA ACAAUGUAG    Cugu guuu  
  |||||||| |||||||||    |||| |||| u
  UGGGUCGU UGUUACAUC    GAca cgga  
UU        C         ----    a    u 


Annotation confidence Not enough data
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Genome context
KB030414.1: 105229-105290 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-221
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-221-5p

Accession MIMAT0039842
Description Pteropus alecto pal-miR-221-5p mature miRNA
Sequence 1 - ACCUGGCAUACAAUGUAGGUUUC - 23
Evidence experimental
Illumina [1]

Mature pal-miR-221-3p

Accession MIMAT0039843
Description Pteropus alecto pal-miR-221-3p mature miRNA
Sequence 41 - AGCUACAUUGUCUGCUGGGUUU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682