miRBase entry: pal-mir-486a-2

Stem-loop pal-mir-486a-2


Accession
MI0032361
Description
Pteropus alecto pal-mir-486a-2 precursor miRNA


Sequence

UCCUGUACUGAGCUGCCCCGAGcugggcacagugaagagccuCGGGGCAGCUCAGUACAGGAU
((((((((((((((((((((((((...((...))...)).)))))))))))))))))))))).

Structure
-                      -  ggg  c 
 UCCUGUACUGAGCUGCCCCGAG cu   ca  
 |||||||||||||||||||||| ||   || a
 AGGACAUGACUCGACGGGGCuc ga   gu  
U                      c  gaa  g 


Annotation confidence Not enough data
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Genome context
KB030862.1: 1990399-1990461 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from pal-mir-486a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-486a-5p

Accession MIMAT0039846
Description Pteropus alecto pal-miR-486a-5p mature miRNA
Sequence 1 - UCCUGUACUGAGCUGCCCCGAG - 22
Evidence experimental
Illumina [1]

Mature pal-miR-486a-3p

Accession MIMAT0039847
Description Pteropus alecto pal-miR-486a-3p mature miRNA
Sequence 43 - CGGGGCAGCUCAGUACAGGAU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682