miRBase entry: pal-mir-23b

Stem-loop pal-mir-23b


Accession
MI0032373
Description
Pteropus alecto pal-mir-23b precursor miRNA


Sequence

GGGUUCCUGGCAUGCUGAUUUgugacuuaagauuaaaAUCACAUUGCCAGGGAUUACCA
((((((((((((((.((((((..............)))))))).))))))))))..)).

Structure
-  --          -  C      gugacu 
 GG  GUUCCUGGCA UG UGAUUU      u
 ||  |||||||||| || ||||||       
 CC  UAGGGACCGU AC ACUAaa      a
A  AU          U  -      auuaga 


Annotation confidence Not enough data
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Genome context
KB031011.1: 1518383-1518441 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-23b-5p

Accession MIMAT0039870
Description Pteropus alecto pal-miR-23b-5p mature miRNA
Sequence 1 - GGGUUCCUGGCAUGCUGAUUU - 21
Evidence experimental
Illumina [1]

Mature pal-miR-23b-3p

Accession MIMAT0039871
Description Pteropus alecto pal-miR-23b-3p mature miRNA
Sequence 38 - AUCACAUUGCCAGGGAUUACCA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682