miRBase entry: pal-mir-485

Stem-loop pal-mir-485


Accession
MI0032378
Description
Pteropus alecto pal-mir-485 precursor miRNA


Sequence

AGAGGCUGGCCGUGAUGAAUUCgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCU
(((((..(((((((((((.((((...........)))))))).)))))))..)))))..

Structure
--     CU       -    A    auuc 
  AGAGG  GGCCGUG AUGA UUCg    a
  |||||  ||||||| |||| ||||    u
  UCUCC  UCGGCAC UACU Gagc    c
UC     UC       A    -    gaaa 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22097905-22097963 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from pal-mir-485
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-485-5p

Accession MIMAT0039878
Description Pteropus alecto pal-miR-485-5p mature miRNA
Sequence 1 - AGAGGCUGGCCGUGAUGAAUUC - 22
Evidence experimental
Illumina [1]

Mature pal-miR-485-3p

Accession MIMAT0039879
Description Pteropus alecto pal-miR-485-3p mature miRNA
Sequence 38 - GUCAUACACGGCUCUCCUCUCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682