Stem-loop pal-mir-16-1

Accession

MI0032386

Description

Pteropus alecto pal-mir-16-1 precursor miRNA

Sequence

UAGCAGCACGUAAAUAUUGGCGuuaagauuuuuaaauuaucuCCAGUAUUAACUGUGCUGCUGAA
(((((((((((.((((((((.(.(((..........))).).)))))))).)).)))))))))..

Structure

--         -  A        C u   gauu 
  UAGCAGCAC GU AAUAUUGG G uaa    u
  ||||||||| || |||||||| | |||     
  GUCGUCGUG CA UUAUGACC c auu    u
AA         U  A        u u   aaau 

Annotation confidence Not enough data

Genome context

KB030546.1: 3176871-3176935 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pal-mir-16-1

Mature pal-miR-16-5p

• Accession: MIMAT0039892
• Description: Pteropus alecto pal-miR-16-5p mature miRNA
• Sequence: 1 - UAGCAGCACGUAAAUAUUGGCG - 22
• Evidence: experimental ; Illumina [1]

Mature pal-miR-16-3p

• Accession: MIMAT0039893
• Description: Pteropus alecto pal-miR-16-3p mature miRNA
• Sequence: 43 - CCAGUAUUAACUGUGCUGCUGAA - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682