miRBase entry: pal-mir-16-2

Stem-loop pal-mir-16-2


Accession
MI0032387
Description
Pteropus alecto pal-mir-16-2 precursor miRNA


Sequence

UAGCAGCACGUAAAUAUUGGCGuagugaaauaaauauuaaacACCAAUAUUAUUGUGCUGCUUUA
.(((((((((..((((((((.((.................)).))))))))..)))))))))...

Structure
--U         UA        C  agugaaa 
   AGCAGCACG  AAUAUUGG Gu       u
   |||||||||  |||||||| ||       a
   UCGUCGUGU  UUAUAACC ca       a
AUU         UA        A  aauuaua 


Annotation confidence Not enough data
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Genome context
KB030499.1: 3797204-3797268 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-16-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-16-5p

Accession MIMAT0039892
Description Pteropus alecto pal-miR-16-5p mature miRNA
Sequence 1 - UAGCAGCACGUAAAUAUUGGCG - 22
Evidence experimental
Illumina [1]

Mature pal-miR-16-2-3p

Accession MIMAT0039894
Description Pteropus alecto pal-miR-16-2-3p mature miRNA
Sequence 43 - ACCAAUAUUAUUGUGCUGCUUUA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682