miRBase entry: pal-mir-411

Stem-loop pal-mir-411


Accession
MI0032402
Description
Pteropus alecto pal-mir-411 precursor miRNA


Sequence

UAGUAGACCGUAUAGCGUACgcuuuaucugugacgUAUGUAACACGGUCCACUAAC
((((.((((((...((((((((.........).)))))))...)))))).))))..

Structure
--    A      AUA       - uuu 
  UAGU GACCGU   GCGUACg c   a
  |||| ||||||   ||||||| |   u
  AUCA CUGGCA   UGUAUgc g   c
CA    C      CAA       a ugu 


Annotation confidence Not enough data
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Genome context
KB031153.1: 22068759-22068814 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from pal-mir-411
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-411-5p

Accession MIMAT0039923
Description Pteropus alecto pal-miR-411-5p mature miRNA
Sequence 1 - UAGUAGACCGUAUAGCGUAC - 20
Evidence experimental
Illumina [1]

Mature pal-miR-411-3p

Accession MIMAT0039924
Description Pteropus alecto pal-miR-411-3p mature miRNA
Sequence 36 - UAUGUAACACGGUCCACUAAC - 56
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682