miRBase entry: pal-mir-15a

Stem-loop pal-mir-15a


Accession
MI0032411
Description
Pteropus alecto pal-mir-15a precursor miRNA


Sequence

UAGCAGCACAUAAUGGUUUGUggguuuugaaaaggugCAGGCCAUAUUGUGCUGCCUCAAA
..((((((((..((((((((((.............))))))))))..))))))))......

Structure
----UA        UA          gguuu 
      GCAGCACA  AUGGUUUGUg     u
      ||||||||  ||||||||||     g
      CGUCGUGU  UACCGGACgu     a
AAACUC        UA          ggaaa 


Annotation confidence Not enough data
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Genome context
KB030546.1: 3176731-3176791 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-15a-5p

Accession MIMAT0039941
Description Pteropus alecto pal-miR-15a-5p mature miRNA
Sequence 1 - UAGCAGCACAUAAUGGUUUGU - 21
Evidence experimental
Illumina [1]

Mature pal-miR-15a-3p

Accession MIMAT0039942
Description Pteropus alecto pal-miR-15a-3p mature miRNA
Sequence 38 - CAGGCCAUAUUGUGCUGCCUCAAA - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682