miRBase entry: pal-mir-30b

Stem-loop pal-mir-30b


Accession
MI0032413
Description
Pteropus alecto pal-mir-30b precursor miRNA


Sequence

UGUAAACAUCCUACACUCAGCUguaauacauggauuggCUGGGAGGUGGAUGUUUACUU
.((((((((((.((.((((((((............))))))))..))))))))))))..

Structure
-U          U  -A        uaaua 
  GUAAACAUCC AC  CUCAGCUg     c
  |||||||||| ||  ||||||||      
  CAUUUGUAGG UG  GGGUCggu     a
UU          -  GA        uaggu 


Annotation confidence Not enough data
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Genome context
KB030670.1: 2845054-2845112 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-30b-5p

Accession MIMAT0039945
Description Pteropus alecto pal-miR-30b-5p mature miRNA
Sequence 1 - UGUAAACAUCCUACACUCAGCU - 22
Evidence experimental
Illumina [1]

Mature pal-miR-30b-3p

Accession MIMAT0039946
Description Pteropus alecto pal-miR-30b-3p mature miRNA
Sequence 39 - CUGGGAGGUGGAUGUUUACUU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682