miRBase entry: pal-mir-100

Stem-loop pal-mir-100


Accession
MI0032420
Description
Pteropus alecto pal-mir-100 precursor miRNA


Sequence

AACCCGUAGAUCCGAACUUGUGguguuaguccacaCAAGCUUGUGUCUAUAGGUAUG
.(((.((((((.(((.((((((.((......)))))))).))).)))))).)))...

Structure
--A   C      C   A      g  uu 
   ACC GUAGAU CGA CUUGUG ug  a
   ||| |||||| ||| |||||| ||   
   UGG UAUCUG GUU GAACac ac  g
GUA   A      U   C      -  cu 


Annotation confidence Not enough data
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Genome context
KB031151.1: 1559414-1559470 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-100
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-100-5p

Accession MIMAT0039957
Description Pteropus alecto pal-miR-100-5p mature miRNA
Sequence 1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence experimental
Illumina [1]

Mature pal-miR-100-3p

Accession MIMAT0039958
Description Pteropus alecto pal-miR-100-3p mature miRNA
Sequence 36 - CAAGCUUGUGUCUAUAGGUAUG - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682