miRBase entry: pal-mir-181c

Stem-loop pal-mir-181c


Accession
MI0032445
Description
Pteropus alecto pal-mir-181c precursor miRNA


Sequence

AACAUUCAACCUGUCGGUGAGUUugggcaguucaggcaaACCAUCGACCGUUGAGUGGACC
..((((((((..(((((((.(((((...........)))))))))))).))))))))....

Structure
--AA        CU       A     ggca 
    CAUUCAAC  GUCGGUG GUUug    g
    ||||||||  ||||||| |||||    u
    GUGAGUUG  CAGCUAC CAaac    u
CCAG        -C       -     ggac 


Annotation confidence Not enough data
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Genome context
KB030998.1: 940222-940282 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-181c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-181c-5p

Accession MIMAT0040007
Description Pteropus alecto pal-miR-181c-5p mature miRNA
Sequence 1 - AACAUUCAACCUGUCGGUGAGUU - 23
Evidence experimental
Illumina [1]

Mature pal-miR-181c-3p

Accession MIMAT0040008
Description Pteropus alecto pal-miR-181c-3p mature miRNA
Sequence 40 - ACCAUCGACCGUUGAGUGGACC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682