miRBase entry: pal-mir-454

Stem-loop pal-mir-454


Accession
MI0032470
Description
Pteropus alecto pal-mir-454 precursor miRNA


Sequence

ACCCUAUCGAUAUUGUCUGCUGUguaaauagcucugagUAGUGCAAUAUUGCUUAUAGGGUUU
(((((((((((((((((((((..((.....))....))))).)))))))))...)))))))..

Structure
--       ---         -     --GU  a 
  ACCCUAU   CGAUAUUGU CUGCU    gu a
  |||||||   ||||||||| |||||    || a
  UGGGAUA   GUUAUAACG GAUga    cg u
UU       UUC         U     gucu  a 


Annotation confidence Not enough data
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Genome context
KB031150.1: 11786590-11786652 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-454
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-454-5p

Accession MIMAT0040055
Description Pteropus alecto pal-miR-454-5p mature miRNA
Sequence 1 - ACCCUAUCGAUAUUGUCUGCUGU - 23
Evidence experimental
Illumina [1]

Mature pal-miR-454-3p

Accession MIMAT0040056
Description Pteropus alecto pal-miR-454-3p mature miRNA
Sequence 39 - UAGUGCAAUAUUGCUUAUAGGGUUU - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682