miRBase entry: pal-mir-219a-1

Stem-loop pal-mir-219a-1


Accession
MI0032478
Description
Pteropus alecto pal-mir-219a-1 precursor miRNA


Sequence

UGAUUGUCCAAACGCAAUUCUcgagucucuggcuccggccgAGAGUUGAGUCUGGACGUCCCG
.(((.(((((.((.(((((((((.(((.........)))))))))))).)).))))))))...

Structure
--U   U     A  G         a   ucu 
   GAU GUCCA AC CAAUUCUcg guc   g
   ||| ||||| || ||||||||| |||   g
   CUG CAGGU UG GUUGAGAgc cgg   c
GCC   -     C  A         -   ccu 


Annotation confidence Not enough data
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Genome context
KB030441.1: 4383854-4383916 [-]

Database links

Mature pal-miR-219a-5p

Accession MIMAT0039927
Description Pteropus alecto pal-miR-219a-5p mature miRNA
Sequence 1 - UGAUUGUCCAAACGCAAUUCU - 21
Evidence experimental
Illumina [1]

Mature pal-miR-219a-3p

Accession MIMAT0040071
Description Pteropus alecto pal-miR-219a-3p mature miRNA
Sequence 42 - AGAGUUGAGUCUGGACGUCCCG - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682