miRBase entry: pal-mir-133b

Stem-loop pal-mir-133b


Accession
MI0032488
Description
Pteropus alecto pal-mir-133b precursor miRNA


Sequence

CUGGUCAAACGGAACCAAGUccgucuuccugagagguUUGGUCCCCUUCAACCAGCU
(((((..((.((.((((((.((.((((...)))))))))))).)).))..)))))..

Structure
--     CA  C  A      U  g    c 
  CUGGU  AA GG ACCAAG cc ucuu  
  |||||  || || |||||| || |||| c
  GACCA  UU CC UGGUUu gg agag  
UC     AC  C  C      -  -    u 


Annotation confidence Not enough data
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Genome context
KB031158.1: 33908793-33908849 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from pal-mir-133b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-133b-5p

Accession MIMAT0040089
Description Pteropus alecto pal-miR-133b-5p mature miRNA
Sequence 1 - CUGGUCAAACGGAACCAAGU - 20
Evidence experimental
Illumina [1]

Mature pal-miR-133b-3p

Accession MIMAT0040090
Description Pteropus alecto pal-miR-133b-3p mature miRNA
Sequence 38 - UUGGUCCCCUUCAACCAGCU - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682