Stem-loop pal-mir-1180

Accession

MI0032503

Description

Pteropus alecto pal-mir-1180 precursor miRNA

Sequence

UGACCCACCCAGCCGGGAAUAgugcaccguguuugUUUCCGGCUUAGUGGGUGUGU
..((((((..((((((((((((.(((...)))))))))))))))..))))))....

Structure

--UG      CC            u   c 
    ACCCAC  AGCCGGGAAUAg gca  
    ||||||  |||||||||||| ||| c
    UGGGUG  UCGGCCUUUguu ugu  
UGUG      AU            -   g 

Annotation confidence Not enough data

Genome context

KB030531.1: 4368418-4368473 [+]

Mature pal-miR-1180-5p

• Accession: MIMAT0040118
• Description: Pteropus alecto pal-miR-1180-5p mature miRNA
• Sequence: 1 - UGACCCACCCAGCCGGGAAUA - 21
• Evidence: experimental ; Illumina [1]

Mature pal-miR-1180-3p

• Accession: MIMAT0040119
• Description: Pteropus alecto pal-miR-1180-3p mature miRNA
• Sequence: 36 - UUUCCGGCUUAGUGGGUGUGU - 56
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682