Stem-loop pal-mir-409

Accession

MI0032507

Description

Pteropus alecto pal-mir-409 precursor miRNA

Sequence

AGGUUACCCGAGCAACUUUGCAUcuggacgacGAAUGUUGCUCGGUGAACCCCU
.((((..((((((((((((((........).)))).)))))))))..))))...

Structure

--A    AC         -    - AUc 
   GGUU  CCGAGCAAC UUUG C   u
   ||||  ||||||||| |||| |    
   CCAA  GGCUCGUUG AAGc g   g
UCC    GU         U    a cag 

Annotation confidence Not enough data

Genome context

KB031153.1: 22107743-22107796 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from pal-mir-409

Mature pal-miR-409-5p

• Accession: MIMAT0040126
• Description: Pteropus alecto pal-miR-409-5p mature miRNA
• Sequence: 1 - AGGUUACCCGAGCAACUUUGCAU - 23
• Evidence: experimental ; Illumina [1]

Mature pal-miR-409-3p

• Accession: MIMAT0040127
• Description: Pteropus alecto pal-miR-409-3p mature miRNA
• Sequence: 33 - GAAUGUUGCUCGGUGAACCCCU - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25128405
   Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
   Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
   BMC Genomics (2014) 15:682