miRBase entry: pal-mir-340

Stem-loop pal-mir-340


Accession
MI0032542
Description
Pteropus alecto pal-mir-340 precursor miRNA


Sequence

UUAUAAAGCAAUGAGACUGAUUgucauguguugugugugggaUCCGUCUCAGUUACUUUAUAGCC
((((((((...((((((.((((.((((.......))).).)))).))))))....))))))))..

Structure
--        -CAA      U    g -   gu 
  UUAUAAAG    UGAGAC GAUU u cau  g
  ||||||||    |||||| |||| | |||  u
  GAUAUUUC    ACUCUG CUag g gug  u
CC        AUUG      C    g u   ug 


Annotation confidence Not enough data
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Genome context
KB031114.1: 16120137-16120201 [+]

Database links

Mature pal-miR-340-5p

Accession MIMAT0040191
Description Pteropus alecto pal-miR-340-5p mature miRNA
Sequence 1 - UUAUAAAGCAAUGAGACUGAUU - 22
Evidence experimental
Illumina [1]

Mature pal-miR-340-3p

Accession MIMAT0040192
Description Pteropus alecto pal-miR-340-3p mature miRNA
Sequence 43 - UCCGUCUCAGUUACUUUAUAGCC - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682