miRBase entry: pal-mir-107a

Stem-loop pal-mir-107a


Accession
MI0032547
Description
Pteropus alecto pal-mir-107a precursor miRNA


Sequence

AGCUUCUUUACAGUGUUGCCUUGuggcauggaguucaAGCAGCAUUGUACAGGGCUAU
((((.((.(((((((((((.(((.(((.....))))))))))))))))).))))))..

Structure
--    U  U           C   u   a 
  AGCU CU UACAGUGUUGC UUG ggc u
  |||| || ||||||||||| ||| ||| g
  UCGG GA AUGUUACGACG Aac uug g
UA    -  C           -   -   a 


Annotation confidence Not enough data
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Genome context
KB031155.1: 16684543-16684600 [+]

Database links

Mature pal-miR-107a-5p

Accession MIMAT0040201
Description Pteropus alecto pal-miR-107a-5p mature miRNA
Sequence 1 - AGCUUCUUUACAGUGUUGCCUUG - 23
Evidence experimental
Illumina [1]

Mature pal-miR-107a-3p

Accession MIMAT0040202
Description Pteropus alecto pal-miR-107a-3p mature miRNA
Sequence 38 - AGCAGCAUUGUACAGGGCUAU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682