miRBase entry: pal-mir-106a

Stem-loop pal-mir-106a


Accession
MI0032549
Description
Pteropus alecto pal-mir-106a precursor miRNA


Sequence

AAAAGUGCUUACAGUGCAGGUAGcuuuuugagaucuACUGCAAUGCAAGCACUUCUUAC
..((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).....

Structure
---AA        A  G     G   c   u 
     AAGUGCUU CA UGCAG UAG uuu  
     |||||||| || ||||| ||| ||| u
     UUCACGAA GU ACGUC Auc aga  
CAUUC        C  A     -   u   g 


Annotation confidence Not enough data
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Genome context
KB031071.1: 682421-682479 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from pal-mir-106a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature pal-miR-106a-5p

Accession MIMAT0040204
Description Pteropus alecto pal-miR-106a-5p mature miRNA
Sequence 1 - AAAAGUGCUUACAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature pal-miR-106a-3p

Accession MIMAT0040205
Description Pteropus alecto pal-miR-106a-3p mature miRNA
Sequence 37 - ACUGCAAUGCAAGCACUUCUUAC - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25128405
    Characterisation of novel microRNAs in the Black flying fox (Pteropus alecto) by deep sequencing
    Cowled C, Stewart CR, Likic VA, Friedländer MR, Tachedjian M, Jenkins KA, Tizard ML, Cottee P, Marsh GA, Zhou P, Baker ML, Bean AG, Wang LF
    BMC Genomics (2014) 15:682